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1

A new Lamarckian genetic algorithm for flexible ligand-receptor docking

Jan Fuhrmann, Alexander Rurainski, Hans-Peter Lenhof, Dirk Neumann

Journal:

Journal of Computational Chemistry

Year:

2010

Language:

english

File:

PDF, 211 KB

english, 2010

2

[IEEE 2012 16th International Conference on Information Visualisation (IV) - Montpellier, France (2012.07.11-2012.07.13)] 2012 16th International Conference on Information Visualisation - ProteinScanAR - An Augmented Reality Web Application for High School Education in Biomolecular Life Sciences

Nickels, Stefan, Sminia, Hienke, Mueller, Sabine C., Kools, Bas, Dehof, Anna Katharina, Lenhof, Hans-Peter, Hildebrandt, Andreas

Year:

2012

Language:

english

File:

PDF, 1.03 MB

english, 2012

3

AN OPTIMAL CONSTRUCTION METHOD FOR GENERALIZED CONVEX LAYERS

LENHOF, HANS-PETER, SMID, MICHIEL

Journal:

International Journal of Computational Geometry & Applications

Year:

1993

Language:

english

File:

PDF, 1011 KB

english, 1993

4

Evidence for the Mode of Action of the Highly Cytotoxic Streptomyces Polyketide Kendomycin

Yasser A. Elnakady, Manfred Rohde, Florenz Sasse, Christina Backes, Andreas Keller, Hans-Peter Lenhof, Kira J. Weissman, Rolf Müller

Journal:

Year:

2007

Language:

english

File:

PDF, 964 KB

english, 2007

5

Cover Picture: Evidence for the Mode of Action of the Highly Cytotoxic Streptomyces Polyketide Kendomycin (ChemBioChem 11/2007)

Yasser A. Elnakady, Manfred Rohde, Florenz Sasse, Christina Backes, Andreas Keller, Hans-Peter Lenhof, Kira J. Weissman, Rolf Müller

Journal:

Year:

2007

File:

PDF, 35 KB

2007

6

Glycosylation patterns of human chorionic gonadotropin revealed by liquid chromatography-mass spectrometry and bioinformatics

Hansjörg Toll, Peter Berger, Andreas Hofmann, Andreas Hildebrandt, Herbert Oberacher, Hans Peter Lenhof, Christian G. Huber

Journal:

ELECTROPHORESIS

Year:

2006

Language:

english

File:

PDF, 434 KB

english, 2006

7

The Roche Cancer Genome Database (RCGDB)

Jan Küntzer, Daniela Eggle, Hans-Peter Lenhof, Helmut Burtscher, Stefan Klostermann

Journal:

Year:

2010

Language:

english

File:

PDF, 480 KB

english, 2010

8

Frequent overexpression of the genes FXR1, CLAPM1 and EIF4G located on amplicon 3q26-27 in squamous cell carcinoma of the lung

Nicole Comtesse, Andreas Keller, Isabel Diesinger, Christine Bauer, Klaus Kayser, Hanno Huwer, Hans-Peter Lenhof, Eckart Meese

Journal:

International Journal of Cancer

Year:

2007

Language:

english

File:

PDF, 507 KB

english, 2007

9

Toward an early diagnosis of lung cancer: An autoantibody signature for squamous cell lung carcinoma

Petra Leidinger, Andreas Keller, Nicole Ludwig, Stefanie Rheinheimer, Jürg Hamacher, Hanno Huwer, Ingo Stehle, Hans-Peter Lenhof, Eckart Meese

Journal:

International Journal of Cancer

Year:

2008

Language:

english

File:

PDF, 192 KB

english, 2008

10

Genome wide expression profiling identifies specific deregulated pathways in meningioma

Andreas Keller, Nicole Ludwig, Christina Backes, Bernd F.M. Romeike, Nicole Comtesse, Wolfram Henn, Wolf-Ingo Steudel, Christian Mawrin, Hans-Peter Lenhof, Eckart Meese

Journal:

International Journal of Cancer

Year:

2009

Language:

english

File:

PDF, 443 KB

english, 2009

11

Amplicons on chromosome 12q13-21 in glioblastoma recurrences

Ulrike Fischer, Petra Leidinger, Andreas Keller, Amos Folarin, Ralf Ketter, Norbert Graf, Hans-Peter Lenhof, Eckart Meese

Journal:

International Journal of Cancer

Year:

2010

Language:

english

File:

PDF, 451 KB

english, 2010

12

A new method for the gradient-based optimization of molecular complexes

Jan Fuhrmann, Alexander Rurainski, Hans-Peter Lenhof, Dirk Neumann

Journal:

Journal of Computational Chemistry

Year:

2009

Language:

english

File:

PDF, 160 KB

english, 2009

13

A consensus line search algorithm for molecular potential energy functions

Alexander Rurainski, Andreas Hildebrandt, Hans-Peter Lenhof

Journal:

Journal of Computational Chemistry

Year:

2009

Language:

english

File:

PDF, 147 KB

english, 2009

14

Langevin dynamics simulations of macromolecules on parallel computers

Bernd Jung, Hans-Peter Lenhof, Peter Müller, Christine Rüb

Journal:

Macromolecular Theory and Simulations

Year:

1997

Language:

english

File:

PDF, 746 KB

english, 1997

15

Protein- versus peptide fractionation in the first dimension of two-dimensional high-performance liquid chromatography-matrix-assisted laser desorption/ionization tandem mass spectrometry for qualitative proteome analysis of tissue samples

Katja Melchior, Andreas Tholey, Sabrina Heisel, Andreas Keller, Hans-Peter Lenhof, Eckart Meese, Christian G. Huber

Journal:

Journal of Chromatography A

Year:

2010

Language:

english

File:

PDF, 402 KB

english, 2010

16

A polyhedral approach to sequence alignment problems

John D. Kececioglu, Hans-Peter Lenhof, Kurt Mehlhorn, Petra Mutzel, Knut Reinert, Martin Vingron

Journal:

Discrete Applied Mathematics

Year:

2000

Language:

english

File:

PDF, 1.15 MB

english, 2000

17

Simulating synthetic polymer chains in parallel

Bernd Jung, Hans-Peter Lenhof, Peter Müller, Christine Rüb

Journal:

Future Generation Computer Systems

Year:

2000

Language:

english

File:

PDF, 289 KB

english, 2000

18

Lectin–sugar interaction : Calculated versus experimental binding energies

Dirk Neumann, Oliver Kohlbacher, Hans-Peter Lenhof, Claus-Michael Lehr

Journal:

Year:

2002

Language:

english

File:

PDF, 952 KB

english, 2002

19

Immunogenicity of autoantigens

Christina Backes, Nicole Ludwig, Petra Leidinger, Christian Harz, Jana Hoffmann, Andreas Keller, Eckart Meese, Hans-Peter Lenhof

Journal:

Year:

2011

Language:

english

File:

PDF, 3.50 MB

english, 2011

20

Transcriptome analysis by GeneTrail revealed regulation of functional categories in response to alterations of iron homeostasis inArabidopsis thaliana

Mara Schuler, Andreas Keller, Christina Backes, Katrin Philippar, Hans-Peter Lenhof, Petra Bauer

Journal:

BMC Plant Biology

Year:

2011

Language:

english

File:

PDF, 1.56 MB

english, 2011

21

The Roche Cancer Genome Database 2.0

Jan Küntzer, Daniela Maisel, Hans-Peter Lenhof, Stefan Klostermann, Helmut Burtscher

Journal:

BMC Medical Genomics

Year:

2011

Language:

english

File:

PDF, 1.28 MB

english, 2011

22

Large-scale antibody profiling of human blood sera: The future of molecular diagnosis

Andreas Keller, Nicole Ludwig, Sabrina Heisel, Petra Leidinger, Claudia Andres, Wolf-Ingo Steudel, Hanno Huwer, Bernhard Burgeth, Matthias Hein, Joachim Weickert, Eckart Meese, Hans-Peter Lenhof

Journal:

Informatik-Spektrum

Year:

2009

Language:

english

File:

PDF, 339 KB

english, 2009

23

Visuelle Analytik biologischer Daten

Kay Nieselt, Michael Kaufmann, Andreas Gerasch, Hans-Peter Lenhof, Marcel Spehr, Stefan Hesse, Stefan Gumhold

Journal:

Informatik-Spektrum

Year:

2010

Language:

german

File:

PDF, 759 KB

german, 2010

24

A branch-and-cut algorithm for multiple sequence alignment

Ernst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert

Journal:

Mathematical Programming

Year:

2006

Language:

english

File:

PDF, 519 KB

english, 2006

25

BALLView: An object-oriented molecular visualization and modeling framework

Andreas Moll, Andreas Hildebrandt, Hans-Peter Lenhof, Oliver Kohlbacher

Journal:

Journal of Computer-Aided Molecular Design

Year:

2005

Language:

english

File:

PDF, 519 KB

english, 2005

26

Structure prediction of protein complexes by an NMR-based protein docking algorithm

Oliver Kohlbacher, Andreas Burchardt, Andreas Moll, Andreas Hildebrandt, Peter Bayer, Hans-Peter Lenhof

Journal:

Journal of Biomolecular NMR

Year:

2001

Language:

english

File:

PDF, 103 KB

english, 2001

27

Computational modeling of the sugar–lectin interaction

Dirk Neumann, Claus-Michael Lehr, Hans-Peter Lenhof, Oliver Kohlbacher

Journal:

Advanced Drug Delivery Reviews

Year:

2004

Language:

english

File:

PDF, 392 KB

english, 2004

28

BALL - biochemical algorithms library 1.3

Andreas Hildebrandt, Anna Katharina Dehof, Alexander Rurainski, Andreas Bertsch, Marcel Schumann, Nora C Toussaint, Andreas Moll, Daniel Stöckel, Stefan Nickels, Sabine C Mueller, Hans-Peter Lenhof, O

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 350 KB

english, 2010

29

A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors

Andreas Keller, Nicole Ludwig, Nicole Comtesse, Andreas Hildebrandt, Eckart Meese, Hans-Peter Lenhof

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 487 KB

english, 2006

30

Computation of significance scores of unweighted Gene Set Enrichment Analyses

Andreas Keller, Christina Backes, Hans-Peter Lenhof

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 310 KB

english, 2007

31

BNDB – The Biochemical Network Database

Jan Küntzer, Christina Backes, Torsten Blum, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 776 KB

english, 2007

32

GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments

Andreas Keller, Christina Backes, Maher Al-Awadhi, Andreas Gerasch, Jan Küntzer, Oliver Kohlbacher, Michael Kaufmann, Hans-Peter Lenhof

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 656 KB

english, 2008

33

High-throughput miRNA profiling of human melanoma blood samples

Petra Leidinger, Andreas Keller, Anne Borries, Jörg Reichrath, Knuth Rass, Sven U Jager, Hans-Peter Lenhof, Eckart Meese

Journal:

Year:

2010

Language:

english

File:

PDF, 1.34 MB

english, 2010

34

miRNAs in lung cancer - Studying complex fingerprints in patient's blood cells by microarray experiments

Andreas Keller, Petra Leidinger, Anne Borries, Anke Wendschlag, Frank Wucherpfennig, Matthias Scheffler, Hanno Huwer, Hans-Peter Lenhof, Eckart Meese

Journal:

Year:

2009

Language:

english

File:

PDF, 919 KB

english, 2009

35

Abstract analysis of pathways using the BN++ software framework

Jan Küntzer, Benny Kneissl, Oliver Kohlbacher, Hans-Peter Lenhof

Journal:

BMC Systems Biology

Year:

2007

Language:

english

File:

PDF, 195 KB

english, 2007

36

Is there a general autoantibody signature for cancer?

Nicole Ludwig, Andreas Keller, Petra Leidinger, Christian Harz, Christina Backes, Hans-Peter Lenhof, Eckart Meese

Journal:

European Journal of Cancer

Year:

2012

Language:

english

File:

PDF, 1.50 MB

english, 2012

37

Specific peripheral miRNA profiles for distinguishing lung cancer from COPD

Leidinger, Petra, Keller, Andreas, Borries, Anne, Huwer, Hanno, Rohling, Mareike, Huebers, Junko, Lenhof, Hans-Peter, Meese, Eckart

Journal:

Year:

2011

Language:

english

File:

PDF, 589 KB

english, 2011

38

Novel autoantigens immunogenic in COPD patients

Petra Leidinger, Andreas Keller, Sabrina Heisel, Nicole Ludwig, Stefanie Rheinheimer, Veronika Klein, Claudia Andres, Jürg Hamacher, Hanno Huwer, Bernhard Stephan, Ingo Stehle, Hans-Peter Lenhof, Ecka

Journal:

Respiratory Research

Year:

2009

Language:

english

File:

PDF, 878 KB

english, 2009

39

miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases

Cedric Laczny, Petra Leidinger, Jan Haas, Nicole Ludwig, Christina Backes, Andreas Gerasch, Michael Kaufmann, Britta Vogel, Hugo A Katus, Benjamin Meder, Cord Stähler, Eckart Meese, Hans-Peter Lenhof,

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.13 MB

english, 2012

40

NightShift: NMR shift inference by general hybrid model training - a framework for NMR chemical shift prediction

Anna Katharina Dehof, Simon Loew, Hans-Peter Lenhof…

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 534 KB

english, 2013

41

Efficient computation of root mean square deviations under rigid transformations

Hildebrandt, Anna K., Dietzen, Matthias, Lengauer, Thomas, Lenhof, Hans-Peter, Althaus, Ernst, Hildebrandt, Andreas

Journal:

Journal of Computational Chemistry

Year:

2014

Language:

english

File:

PDF, 304 KB

english, 2014

42

Proteomic Study of Human Glioblastoma Multiforme Tissue Employing Complementary Two-Dimensional Liquid Chromatography- and Mass Spectrometry-Based Approaches

Melchior, Katja, Tholey, Andreas, Heisel, Sabrina, Keller, Andreas, Lenhof, Hans-Peter, Meese, Eckart, Huber, Christian G.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.56 MB

english, 2009

43

[IEEE 2010 14th International Conference Information Visualisation (IV) - London, TBD, United Kingdom (2010.07.26-2010.07.29)] 2010 14th International Conference Information Visualisation - Real-Time Ray Tracing of Complex Molecular Scenes

Marsalek, Lukas, Dehof, Anna Katharina, Georgiev, Iliyan, Lenhof, Hans-Peter, Slusallek, Philipp, Hildebrandt, Andreas

Year:

2010

Language:

english

File:

PDF, 5.79 MB

english, 2010

44

A Combinatorial Approach to Protein Docking with Flexible Side Chains

Althaus, Ernst, Kohlbacher, Oliver, Lenhof, Hans-Peter, Müller, Peter

Journal:

Journal of Computational Biology

Year:

2002

Language:

english

File:

PDF, 345 KB

english, 2002

45

[IEEE Distributed Processing, Workshops and Phd Forum (IPDPSW) - Atlanta, GA, USA (2010.04.19-2010.04.23)] 2010 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW) - Measuring properties of molecular surfaces using ray casting

Phillips, Mike, Georgiev, Iliyan, Dehof, Anna Katharina, Nickels, Stefan, Marsalek, Lukas, Lenhof, Hans-Peter, Hildebrandt, Andreas, Slusallek, Philipp

Year:

2010

Language:

english

File:

PDF, 485 KB

english, 2010

46

Stable serum miRNA profiles as potential tool for non-invasive lung cancer diagnosis

Keller, Andreas, Leidinger, Petra, Gislefoss, Randi, Haugen, Aage, Langseth, Hilde, Staehler, Peer, Lenhof, Hans-Peter, Meese, Eckart

Journal:

Year:

2011

Language:

english

File:

PDF, 1.51 MB

english, 2011

47

[IEEE 2013 IEEE Symposium on Biological Data Visualization (BioVis) - Atlanta, GA, USA (2013.10.13-2013.10.14)] 2013 IEEE Symposium on Biological Data Visualization (BioVis) - PresentaBALL — A powerful package for presentations and lessons in structural biology

Nickels, Stefan, Stockel, Daniel, Mueller, Sabine C., Lenhof, Hans-Peter, Hildebrandt, Andreas, Dehof, Anna Katharina

Year:

2013

Language:

english

File:

PDF, 2.08 MB

english, 2013

48

A Polyhedral Approach to RNA Sequence Structure Alignment

LENHOF, HANS-PETER, REINERT, KNUT, VINGRON, MARTIN

Journal:

Journal of Computational Biology

Year:

1998

Language:

english

File:

PDF, 1.73 MB

english, 1998

49

Phylogenomics with paralogs

Hellmuth, Marc, Wieseke, Nicolas, Lechner, Marcus, Lenhof, Hans-Peter, Middendorf, Martin, Stadler, Peter F.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 822 KB

english, 2015

50

SEQUENTIAL AND PARALLEL ALGORITHMS FOR THE k CLOSEST PAIRS PROBLEM

LENHOF, HANS-PETER, SMID, MICHIEL

Journal:

International Journal of Computational Geometry & Applications

Year:

1995

Language:

english

File:

PDF, 710 KB

english, 1995

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